Projects & Writing

Write-ups on research and engineering projects — the decisions, trade-offs, and an occasional sprinkling of philosophical takes.

No More Mr. Nice Prompt: Three Eras of AI Clinical Data Extraction

No More Mr. Nice Prompt: Three Eras of AI Clinical Data Extraction

Python LLMs Clinical NLP

InstaWell: Open-Source Thermal Shift Assay Analysis in Python

InstaWell: Open-Source Thermal Shift Assay Analysis in Python

Python Open Source

Clinical NLP as a Socratic Seminar

Clinical NLP as a Socratic Seminar

Python LLMs Oncology Clinical NLP

Gut Microbiome Signatures and the Difficulty of p>>n

Gut Microbiome Signatures and the Difficulty of p>>n

R Bioinformatics Oncology

RNA-Seq Analysis of Genetic Ancestry and Tumor Molecular Profiles in CRC

RNA-Seq Analysis of Genetic Ancestry and Tumor Molecular Profiles in CRC

R Bioinformatics Oncology

Good Enough vs. Gold Standard: Survival Analysis with RMST in the NordICC Era

Good Enough vs. Gold Standard: Survival Analysis with RMST in the NordICC Era

R Survival Analysis Oncology

My First Paper: A Chemistry Major's Folly

My First Paper: A Chemistry Major's Folly

R Python Oncology